Dates: 17th & 18th October 2023 ( 2 EU afternoons or 2 US ET mornings)
Venue: Remote (https://conectaha.csic.es/b/bla-i7j-g7z-klh)
Aim: The aim of this meeting is to get feedback and showcase how facilities are using Scipion and show what Scipion offers to a Cryo-em facility. There will be talks but also plenty of time for discussion.
Target Audience: Cryo-em facility staff wanting to do or already doing on-the-fly processing.
Conditions: The workshop will be remote. No programming skills are required. We will use in-house bigbluebutton conference system.
Verify your browser works at https://demo.bigbluebutton.org/
Program:
San Francisco – 05:00 // Minneapolis – 07:00 // New York – 08:00 // São Paulo – 09:00 // Madrid – 14:00 // London – 13:00
Beijing – 20:00 // Tokyo – 21:00 // Sydney – 23:00
Tuesday 17th October – New developments/Solutions
14.00 (CEST) Welcome – Jose María
14.15-14:40 Introduction to Scipion – Pablo Conesa (CNB)
14:40-15:20 Optimizing Cryo-EM facilities with SmartScope – Jonathan Bouvette (Princeton)
15:20-16:00 Scipion and Smart scope – Alberto García (CNB)
16:00-16:40 EMhub: a web platform for CryoEM centers management and on-the-fly data processing (Jose Miguel de la Rosa (St. Jude Children’s Research Hospital Memphis, TN, USA)
17:20-18:00 Streaming and Unattended Workflows for SPA Processing – Daniel Marchan (CNB)
Wednesday 18th October – Facilities real cases
14.00 (CEST) Data flow in cryo-EM facilities: LMB example – Grigory Sharov (LMB)
14.15-14:40 CM01 and processing pipeline at ESRF – Isai and Olof (ESRF)
14:40-15:20 Setup at CNB – Javier Chichón (CNB)
15:20-16:00 Facilities + Tomography + Scipion – Pablo Conesa (CNB)
16:00-17:45 Discussion and conclusions
– Data storage and transfer
– IT support
– Reporting
– Automation: Grid screening, acquisition image processing
– Others?
17:45-18.00 “Group picture” + End
National Center for Biotechnology (CNB), Madrid, Spain
Madrid, October 17 – 18, 2023
How to find us: https://idospece.i2pc.margaro.eus/contact-us/
REGISTRATION
Registration will be free for all attendees.
Fill your application here
