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I2PC Seminar Series 2024

Instruct Image Processing Center 2024 Seminar Series Banner

The Instruct i2PC from Instruct Spain is organizing the fifth edition of a seminar series on cryoEM and cryoET methods for image processing. We will be gathering expert developers and users so new and existing methods can gain visibility and users can understand the applications and mechanisms of the presented algorithms.

The webinars will be held online without registration, and they are free. You can join the session and launch questions to the speakers through next link:
https://conectaha.csic.es/b/bla-rkh-dqa-rpn

The contents and speakers will be:

3rd October (10:00 CET Madrid) – Szu-Chi Chung, Department of Applied Mathematics, National Sun Yat-sen University, No. 70, Lienhai Rd, Kaohsiung, Taiwan – Cryo-forum: A processing framework for orientation information recovery with uncertainty measure and its application in cryo-EM image analysis.

2nd December (11:00 CET Madrid) – Andreas Engel, Case Western Reserver University, Switzerland – Robotic grid preparation of vitrified biomolecules from nano litre volumes.

16th December (15:00 CET Madrid) – Joey Davis, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA – Learning structural heterogeneity from cryo-electron sub-tomograms with tomoDRGN.

More speakers and talks are still to be determined for this seminar series. Please stay tuned for more information.

See you there!

I2PC Seminar Series 2023

Following the tradition, I2PC (Instruct Image Processing Center) is organizing the forth edition of a seminar series on cryoEM and cryoET methods for image processing. The aim of the seminar series is to gather expert developers and users in a same framework where the algorithms can gain visibility and users can understand the applications and mechanisms of the presented algorithms.

The webinars will be online and free without registration of cost. You can join the session through next link:
https://conectaha.csic.es/b/bla-rkh-dqa-rpn

The contents and speakers will be:

7th September (Time:  9:00 AM New York, 15:00PM Madrid, 14:00PM London). Bernard Heymann – The implications and resolution of the Ewald sphere issue in cryoEM. National Cryo-EM Program, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc

21th September (Time: 9:00AM Los Angeles, 18:00PM Madrid, 17:00PM London). Petar Petrov – The laser phase plate in cryo-EM: new approaches to image acquisition and analysis. Holger Müller group at UC Berkeley.

5th October (Time: 9:00AM New York, 15:00PM Madrid, 14:00PM London). Christopher JF Cameron – Reliable protein identification in cryo-EM images by machine-learning consensus.  Hemant Tagare and Mark Gerstein groups at Yale University.

19th October (Time: 9:00AM New York, 15:00PM Madrid, 14:00PM London). Eduard Baquero – Structural study of a broadly neutralizing anti-HIV-1 antibody from a post-treatment controller. NanoImaging Facility Core Institut Pasteur


I2PC Seminar Series on Image Processing 2022

Following the tradition, I2PC (Instruct Image Processing Center) is organizing the third edition of seminar series on cryoEM and cryoET methods for image processing. 
The aim of the seminar series is to gather expert developers and users in a same  framework where the algorithms can gain visibility and users can understand the applications and mechanisms of the presented algorithms. 

The webinars will be online and they are absolutely free (registration is not required). You can join the session through next link 

https://conectaha.csic.es/b/bla-rkh-dqa-rpn

The contents and speakers will be 

  • April 21th. (14:00 London, Dublin,  15:00 Madrid, Berlin, Paris, 9:00 New York)
    Sjors Scheres – New developments in RELION-4.0.
    MRC Laboratory of Molecular Biology 
  • May 12th   (16:00 London, Dublin,  17:00 Madrid, Berlin, Paris, 11:00 New York, 9:00 New Mexico)
    Thomas C. Terwilliger. AlphaFold changes everything.
    Los Alamos National Laboratory
  • May 26th (14:00 London, Dublin,  15:00 Madrid, Berlin, Paris, 9:00 New York)
    Daniel Marchan and Marcos Gragera. Stream processing for facilities. 
    BioComputing Unit CNB/CSIC. 
  • June 9th (14:00 London, Dublin,  15:00 Madrid, Berlin, Paris, 9:00 New York)
    Carsten Sachse. Statistical methods for the cryo-EM toolbox. Forschungszentrum Jülich GmbH.
    Ernst Ruska-Centre for Microscopy and Spectroscopy with Electrons. 
  • June 23th (14:00 London, Dublin,  15:00 Madrid, Berlin, Paris, 9:00 New York)
    Min Xu. AITom: Open-source AI platform for cryo-electron tomography data analysis. 
    School of Computer Science. Carnegie Mellon University
  • June 30th(14:00 London, Dublin,  15:00 Madrid, Berlin, Paris, 9:00 New York)
    Carlos Óscar Sorzano. Validation tools in cryoEM.
    BioComputing Unit CNB/CSIC. 

The seminar series will continue in September with next speakers, the exact day and time will be announced in summer

  • Dmitry Lyumkis – Laboratory of Genetics, The Salk Institute of Biological Sciences
  • Jorge Jimenez –  BioComputing Unit CNB/CSIC. 
  • Lorenz Lamm – Helmholtz Pioneer Campus, Helmholtz Munich

I2PC Seminar series on Image processing

Dear EM community,

From I2PC we are proud to announce the second part of our seminar series on Image processing, addressed to Electron Tomography Methods.

The aim of the seminar series is to gather expert developers and users in a same framework where the algorithms can gain visibility and users can understand the applications and mechanisms of the presented algorithms. The webinars will be online at 16:00 GTM+1 (Berlin, Paris, Madrid) and they are free without registration of cost. You can join the session through next link.

https://conectaha.csic.es/b/bla-rkh-dqa-rpn

The contents (speakers are free to present other contents) and speakers will be

3rd June. DeepFinder.Emmanuel Moebel. CNRS-UMR 144, Inria, CNRS, Institut Curie, PSL Research University, France

10th June. NOVACTF. Beata Turonova. Max-Planck Institute of Biophysics, Germany.

17th June.PySeg. Antonio Martínez-Sánchez.Universidad de Oviedo, Spain.

24th June. cryoCARE. Tim Oliver Buchholz.Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG), Germany

8th July. Dynamo. Daniel Castaño. Dynamo. Biozentrum, University of Basel. Switzerland

With best wishes

I2PC Team

I2PC Webinars

For a theoretical and practical background on image processing using Scipion, Xmipp and other tools available through Scipion, the Instruct Image Processing Center (I2PC) is organizing short Webinar cycles.

There will be two cycles: New image processing workflows, and Scipion’s tools.

Webinars will be available through the CSIC Conecta platform every Fridays at 17.00 PM CEST with a maximum duration of 1h:

May 29th.
From movies to particles.
Speaker: Carlos Oscar S. Sorzano
Online Registration for this Webinar.
To access the recording of the Webinar click here

June 12th.
From particles to structure.
Speaker: Carlos Oscar S. Sorzano
To access the recording of the Webinar click here

June 26th.
Local resolution tools.
Speaker: Jose Luis Vilas
To access the recording of the Webinar click here

July 10th.
How to install Scipion 3.
Speaker: Pablo Conesa
To access the recording of the Webinar click here

July 24th.
Stream processing in Scipion.
Speaker: David Maluenda
To access the recording of the Webinar click here

Links will be provided after registration

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